purityA: Assess the acquired precursor ion purity of MS/MS spectra.pcalc: Perform purity calculation on a peak matrix.iwNormRcosine: Raised cosine normalisation for isolation window efficiency.iwNormQE.5: Q-Exactive +/- 0.5 range, normalisation for isolation window.iwNormGauss: Gaussian normalisation for isolation window efficiency.initialize-purityD-method: Constructor for S4 class to represent a DI-MS purityD.groupPeaks-purityD-method: Using purityD object, group multiple peaklists by similar mz.groupPeaksEx: Group peaklists from a list of dataframes.getP-purityD-method: Get peaklist for a purityD object.Getfiles: Get files for DI-MS processing.get_additional_mzml_meta: Get additional mzML meta.frag4feature-purityA-method: Using a purityA object, link MS/MS data to XCMS features.flag_remove: Flag and remove unwanted peaks.filterp-purityD-method: Filter out peaks based on intensity and RSD criteria.filterFragSpectra-purityA-method: Filter fragmentations spectra associated with an XCMS feature.dimsPredictPuritySingle: Predict the precursor purity from a DI-MS dataset.dimsPredictPurity-purityD-method: Using purityD object, assess anticipated purity from a DI-MS.createMSP-purityA-method: Using a purityA object, create an MSP file of fragmentation.
averageSpectra-purityD-method: Using purityD object, calculates to average mz, intensity and.averageIntraFragSpectra-purityA-method: Using a purityA object, average and filter fragmentation.averageInterFragSpectra-purityA-method: Using a purityA object, average and filter fragmentation.averageAllFragSpectra-purityA-method: Using a purityA object, average and filter MS/MS spectra for.assessPuritySingle: Assess the purity of a single LC-MS/MS or DI-MS/MS file.
0 kommentar(er)
